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The 2016 Major League Baseball Draft was held on June 9 through June 11, to assign amateur baseball players to MLB teams. The Philadelphia Phillies received the first overall selection. The Los Angeles Dodgers received the 36th pick as compensation for failing to sign Kyle Funkhouser, the 35th overall selection of the 2015 MLB Draft.
First round selections[]
| * | Player did not sign |
|---|
| Pick | Player | Team | Position | School |
|---|---|---|---|---|
| 1 | Mickey Moniak | Philadelphia Phillies | Outfielder | La Costa Canyon High School (CA) |
| 2 | Nick Senzel | Cincinnati Reds | Third baseman | Tennessee |
| 3 | Ian Anderson | Atlanta Braves | Pitcher | Shenendehowa High School (NY) |
| 4 | Riley Pint | Colorado Rockies | Pitcher | St. Thomas Aquinas High School (KS) |
| 5 | Corey Ray | Milwaukee Brewers | Outfielder | Louisville |
| 6 | A.J. Puk | Oakland Athletics | Pitcher | Florida |
| 7 | Braxton Garrett | Miami Marlins | Pitcher | Florence High School (AL) |
| 8 | Cal Quantrill | San Diego Padres | Pitcher | Stanford |
| 9 | Matt Manning | Detroit Tigers | Pitcher | Sheldon High School (CA) |
| 10 | Zack Collins | Chicago White Sox | Catcher | Miami (FL) |
| 11 | Kyle Lewis | Seattle Mariners | Outfielder | Mercer |
| 12 | Jason Groome | Boston Red Sox | Pitcher | Barnegat High School (NJ) |
| 13 | Josh Lowe | Tampa Bay Rays | Third baseman | Pope High School (GA) |
| 14 | Will Benson | Cleveland Indians | Outfielder | The Westminister Schools (GA) |
| 15 | Alex Kirilloff | Minnesota Twins | Outfielder | Plum High School (PA) |
| 16 | Matt Thaiss | Los Angeles Angels of Anaheim | Catcher | Virginia |
| 17 | Forrest Whitley | Houston Astros | Pitcher | Alamo Hights High School (TX) |
| 18 | Blake Rutherford | New York Yankees | Outfielder | Chaminade College Prep (CA) |
| 19 | Justin Dunn | New York Mets | Pitcher | Boston |
| 20 | Gavin Lux | Los Angeles Dodgers | Shortstop | Indian Trail Academy (WI) |
| 21 | T.J. Zeuch | Toronto Blue Jays | Pitcher | Pittsburgh |
| 22 | Will Craig | Pittsburgh Pirates | Third baseman | Wake Forest |
| 23 | Delvin Pérez | St. Louis Cardinals | Shortstop | International Baseball Academy (Puerto Rico) |